edgeR Analysis Output:

Differential Expression Counts:

Plots:

Tables:

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.tsv files can be viewed in Excel or any spreadsheet program.

Additional Information

• Genes without more than 1 CPM in at least 1 samples are insignificant and filtered out.
• 16321 of 30108 (54.21%) genes were filtered out for low expression.
• TMM was the method used to normalise library sizes.
• The edgeR quasi-likelihood test was used with robust settings (robust=TRUE with estimateDisp and glmQLFit).
• MD-Plot highlighted genes are significant at FDR of 0.05 and exhibit log2-fold-change of at least 0.5.

Summary of experimental data:

*CHECK THAT SAMPLES ARE ASSOCIATED WITH CORRECT GROUP(S)*